Normal or Half-Normal Plots of Effects

DESCRIPTION:
Produces a quantile-quantile plot of the effects component of the fit against the appropriate quantiles of the normal distribution.

USAGE:
qqnorm(x, full=F, label, omit=NULL, ...)

REQUIRED ARGUMENTS:
x:
the result of fitting an analysis of variance model, including the cases of multivariate response and multiple-error strata.

OPTIONAL ARGUMENTS:
full:
TRUE for a full normal probability plot of the effects, FALSE for a half-normal plot of the absolute values of the effects.
label:
should some of the points be labeled? Can be set to TRUE, in which case the user will be prompted to identify the points to label, or to a single number, n, in which case the n largest effects (in absolute value) will be labeled.
omit:
those effects that should be omitted from the plot. By default, the first effect (assumed to be the intercept) is omitted. Either numeric or character data can be given. Character data are matched against the effect labels. The intercept is always omitted: if you really want to see it, set its name explicitly to anything other than "(Intercept)"---e.g., names(x$effects)[1] <- "*I*"

Graphical parameters may also be supplied as arguments to this function (see par).


VALUE:
the points plotted, suitable to use as an argument to identify() to label interesting points after the fact. In the case of multiple responses or error strata, the points from the last plot are returned.

SIDE EFFECTS:
A quantile-quantile plot is produced, either of the effects component from the fit or of its absolute value, plotted against the appropriate quantiles of the normal distribution. In the case of multiple response or multiple strata, one plot will be produced for each separate set of effects. Subtitle labels will be composed in this case identifying the response and/or the stratum.

DETAILS:
This function is a method for the generic function qqnorm for class "aov". It can be invoked by calling qqnorm for an object of the appropriate class, or directly by calling qqnorm.aov regardless of the class of the object.